PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929432
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 335aa    MW: 36913.2 Da    PI: 7.2999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929432genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-143980346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++
        462929432 39 PISKREEEVIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 80
                     56889***************.*********.***********95 PP

2Myb_DNA-binding445e-14168209346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++
        462929432 168 PISKREEEVIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 209
                      56889***************.*********.***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-51730IPR009057Homeodomain-like
SuperFamilySSF466891.21E-191786IPR009057Homeodomain-like
PROSITE profilePS500904.3331831IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-233186IPR009057Homeodomain-like
PROSITE profilePS5129421.6563286IPR017930Myb domain
SMARTSM007171.6E-123684IPR001005SANT/Myb domain
PfamPF002492.1E-113980IPR001005SANT/Myb domain
CDDcd001673.14E-93979No hitNo description
PROSITE profilePS500904.739141160IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5143159IPR009057Homeodomain-like
SuperFamilySSF466898.98E-20146215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-23160215IPR009057Homeodomain-like
PROSITE profilePS5129421.656161215IPR017930Myb domain
SMARTSM007171.6E-12165213IPR001005SANT/Myb domain
PfamPF002492.1E-11168209IPR001005SANT/Myb domain
CDDcd001673.14E-9168208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVRKPSHADA GTGERLRRSG KSCRLRWMNY LRPDLKKEPI SKREEEVIIS LQQSLGNRWS  60
TIAARMPGRT DNEIKNYWNS RIRKRLSAAA KAGRTSDSAE EPAAAAAGEE EESTTTAEPL  120
PIPARFPVFA CQLLDGSGGA VSSRLRRSGK SCRLRWMNYL RPDLKKEPIS KREEEVIISL  180
QQSLGNRWST IAARMPGRTD NEIKNYWNSR IRKRLSAAAK AGRTSDSAEE PAAAAAGEEE  240
ESTTTAEPLP IPARFPVFAC QLLDGSGGAV SSSTTTQQKS GSEESEASVG DSNMIHDFFS  300
FDEFDYPSDL LMDVPGVMDA WESELYSANS MGSIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-19182154159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-19182154159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715598e-81EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968332.12e-86PREDICTED: transcription factor MYB82-like
TrEMBLK3XL222e-86K3XL22_SETIT; Uncharacterized protein
STRINGSi002595m7e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-30myb domain protein 46